Uses the DOI for a work to extract metadata from OpenAlex - https://openalex.org/. The OpenAlex data model does not included some fields that are part of the wdds project metadata related identifiers.
Details
Carefully review and edit the metadata produced.
We recommend writing the metadata to a csv, editing the csv, then processing it as demonstrated in the project metadata tutorial.
See also
Other Project Metadata:
download_oa_item(),
expand_tidy_dfs(),
extract_metadata_from_doi(),
generate_metadata_csv(),
generate_repeat_dfs(),
make_simple_df()
Examples
doi <- "doi.org/10.1038/s41597-025-05332-x"
extract_metadata_oa(doi = doi)
#> → Starting now, at 2025-10-08 17:28:41.202421
#> Group Variable
#> 1 Methodology Event Based
#> 2 Archival
#> 3 Creators 1 Name
#> 4 Family Name
#> 5 Given Name
#> 6 Name Identifier
#> 7 Affiliation
#> 8 Affiliation Identifier
#> 9 Creators 2 Name
#> 10 Family Name
#> 11 Given Name
#> 12 Name Identifier
#> 13 Affiliation
#> 14 Affiliation Identifier
#> 15 Creators 3 Name
#> 16 Family Name
#> 17 Given Name
#> 18 Name Identifier
#> 19 Affiliation
#> 20 Affiliation Identifier
#> 21 Creators 4 Name
#> 22 Family Name
#> 23 Given Name
#> 24 Name Identifier
#> 25 Affiliation
#> 26 Affiliation Identifier
#> 27 Creators 5 Name
#> 28 Family Name
#> 29 Given Name
#> 30 Name Identifier
#> 31 Affiliation
#> 32 Affiliation Identifier
#> 33 Creators 6 Name
#> 34 Family Name
#> 35 Given Name
#> 36 Name Identifier
#> 37 Affiliation
#> 38 Affiliation Identifier
#> 39 Creators 7 Name
#> 40 Family Name
#> 41 Given Name
#> 42 Name Identifier
#> 43 Affiliation
#> 44 Affiliation Identifier
#> 45 Creators 8 Name
#> 46 Family Name
#> 47 Given Name
#> 48 Name Identifier
#> 49 Affiliation
#> 50 Affiliation Identifier
#> 51 Creators 9 Name
#> 52 Family Name
#> 53 Given Name
#> 54 Name Identifier
#> 55 Affiliation
#> 56 Affiliation Identifier
#> 57 Creators 10 Name
#> 58 Family Name
#> 59 Given Name
#> 60 Name Identifier
#> 61 Affiliation
#> 62 Affiliation Identifier
#> 63 Creators 11 Name
#> 64 Family Name
#> 65 Given Name
#> 66 Name Identifier
#> 67 Affiliation
#> 68 Affiliation Identifier
#> 69 Creators 12 Name
#> 70 Family Name
#> 71 Given Name
#> 72 Name Identifier
#> 73 Affiliation
#> 74 Affiliation Identifier
#> 75 Creators 13 Name
#> 76 Family Name
#> 77 Given Name
#> 78 Name Identifier
#> 79 Affiliation
#> 80 Affiliation Identifier
#> 81 Creators 14 Name
#> 82 Family Name
#> 83 Given Name
#> 84 Name Identifier
#> 85 Affiliation
#> 86 Affiliation Identifier
#> 87 Creators 15 Name
#> 88 Family Name
#> 89 Given Name
#> 90 Name Identifier
#> 91 Affiliation
#> 92 Affiliation Identifier
#> 93 Creators 16 Name
#> 94 Family Name
#> 95 Given Name
#> 96 Name Identifier
#> 97 Affiliation
#> 98 Affiliation Identifier
#> 99 Creators 17 Name
#> 100 Family Name
#> 101 Given Name
#> 102 Name Identifier
#> 103 Affiliation
#> 104 Affiliation Identifier
#> 105 Creators 18 Name
#> 106 Family Name
#> 107 Given Name
#> 108 Name Identifier
#> 109 Affiliation
#> 110 Affiliation Identifier
#> 111 Creators 19 Name
#> 112 Family Name
#> 113 Given Name
#> 114 Name Identifier
#> 115 Affiliation
#> 116 Affiliation Identifier
#> 117 Creators 20 Name
#> 118 Family Name
#> 119 Given Name
#> 120 Name Identifier
#> 121 Affiliation
#> 122 Affiliation Identifier
#> 123 Creators 21 Name
#> 124 Family Name
#> 125 Given Name
#> 126 Name Identifier
#> 127 Affiliation
#> 128 Affiliation Identifier
#> 129 Creators 22 Name
#> 130 Family Name
#> 131 Given Name
#> 132 Name Identifier
#> 133 Affiliation
#> 134 Affiliation Identifier
#> 135 Creators 23 Name
#> 136 Family Name
#> 137 Given Name
#> 138 Name Identifier
#> 139 Affiliation
#> 140 Affiliation Identifier
#> 141 Creators 24 Name
#> 142 Family Name
#> 143 Given Name
#> 144 Name Identifier
#> 145 Affiliation
#> 146 Affiliation Identifier
#> 147 Creators 25 Name
#> 148 Family Name
#> 149 Given Name
#> 150 Name Identifier
#> 151 Affiliation
#> 152 Affiliation Identifier
#> 153 Creators 26 Name
#> 154 Family Name
#> 155 Given Name
#> 156 Name Identifier
#> 157 Affiliation
#> 158 Affiliation Identifier
#> 159 Titles 1 title
#> 160 publicationYear publicationYear
#> 161 language language
#> 162 Descriptions 1 Description
#> 163 Description Type
#> 164 Funding References 1 Funder Name
#> 165 Funder Identifier
#> 166 Award Number
#> 167 Award URI
#> 168 Award ID
#> 169 Funding References 2 Funder Name
#> 170 Funder Identifier
#> 171 Award Number
#> 172 Award URI
#> 173 Award ID
#> 174 Subjects 1 Subject
#> 175 Subjects 2 Subject
#> 176 Subjects 3 Subject
#> 177 Subjects 4 Subject
#> 178 Related Identifiers 1 Related Identifier
#> 179 Related Identifier Type
#> 180 Relation Type
#> Value
#> 1 FALSE
#> 2 FALSE
#> 3 Collin J Schwantes
#> 4 Schwantes
#> 5 Collin J
#> 6 https://orcid.org/0000-0002-9882-941X
#> 7 Department of Epidemiology of Microbial Diseases, Yale University, New Haven, CT, USA. collin.schwantes@yale.edu.
#> 8 https://ror.org/03v76x132
#> 9 Cecilia A Sánchez
#> 10 Sánchez
#> 11 Cecilia A
#> 12 https://orcid.org/0000-0002-1141-6816
#> 13 Department of Epidemiology of Microbial Diseases, Yale University, New Haven, CT, USA. cecilia.sanchez@yale.edu.
#> 14 https://ror.org/03v76x132
#> 15 Tess Stevens
#> 16 Stevens
#> 17 Tess
#> 18 <NA>
#> 19 Center for Global Health Science and Security, Georgetown University, Washington, DC, USA.
#> 20 https://ror.org/05vzafd60
#> 21 Ryan Zimmerman
#> 22 Zimmerman
#> 23 Ryan
#> 24 https://orcid.org/0000-0002-4376-7418
#> 25 Center for Global Health Science and Security, Georgetown University, Washington, DC, USA.
#> 26 https://ror.org/05vzafd60
#> 27 Greg Albery
#> 28 Albery
#> 29 Greg
#> 30 https://orcid.org/0000-0001-6260-2662
#> 31 Department of Biology, Georgetown University, Washington, DC, USA.
#> 32 https://ror.org/05vzafd60
#> 33 Daniel J Becker
#> 34 Becker
#> 35 Daniel J
#> 36 https://orcid.org/0000-0003-4315-8628
#> 37 School of Biological Sciences, University of Oklahoma, Norman, OK, USA.
#> 38 https://ror.org/02aqsxs83
#> 39 Cole B Brookson
#> 40 Brookson
#> 41 Cole B
#> 42 https://orcid.org/0000-0003-1237-4096
#> 43 Department of Epidemiology of Microbial Diseases, Yale University, New Haven, CT, USA.
#> 44 https://ror.org/03v76x132
#> 45 Rebekah C Kading
#> 46 Kading
#> 47 Rebekah C
#> 48 https://orcid.org/0000-0002-4996-915X
#> 49 Center for Vector-borne Infectious Diseases, Department of Microbiology, Immunology, and Pathology, Colorado State University, Fort Collins, CO, USA.
#> 50 https://ror.org/03k1gpj17
#> 51 Carl N Keiser
#> 52 Keiser
#> 53 Carl N
#> 54 https://orcid.org/0000-0002-4936-7810
#> 55 Emerging Pathogens Institute, University of Florida, Gainesville, FL, USA.
#> 56 https://ror.org/02y3ad647
#> 57 Shashank Khandelwal
#> 58 Khandelwal
#> 59 Shashank
#> 60 <NA>
#> 61 Blue Tiger, LLC, Timonium, MD, USA.
#> 62 https://ror.org/01mzcg363
#> 63 Stephanie Kramer-Schadt
#> 64 Kramer-Schadt
#> 65 Stephanie
#> 66 https://orcid.org/0000-0002-9269-4446
#> 67 Department of Ecological Dynamics, Leibniz Institute for Zoo and Wildlife Research, Berlin, Germany.
#> 68 https://ror.org/05nywn832
#> 69 Raphael Krut-Landau
#> 70 Krut-Landau
#> 71 Raphael
#> 72 <NA>
#> 73 Blue Tiger, LLC, Timonium, MD, USA.
#> 74 https://ror.org/01mzcg363
#> 75 Clifton McKee
#> 76 McKee
#> 77 Clifton
#> 78 https://orcid.org/0000-0002-6149-0598
#> 79 Department of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA.
#> 80 https://ror.org/00za53h95
#> 81 Diego Montecino-Latorre
#> 82 Montecino-Latorre
#> 83 Diego
#> 84 https://orcid.org/0000-0002-5009-5939
#> 85 Wildlife Conservation Society, Health Program, New York, NY, USA.
#> 86 https://ror.org/01xnsst08
#> 87 Zoe O'Donoghue
#> 88 O'Donoghue
#> 89 Zoe
#> 90 <NA>
#> 91 Department of Epidemiology of Microbial Diseases, Yale University, New Haven, CT, USA.
#> 92 https://ror.org/03v76x132
#> 93 Sarah H Olson
#> 94 Olson
#> 95 Sarah H
#> 96 https://orcid.org/0000-0002-8484-9006
#> 97 Wildlife Conservation Society, Health Program, New York, NY, USA.
#> 98 https://ror.org/01xnsst08
#> 99 Mika O'Shea
#> 100 O'Shea
#> 101 Mika
#> 102 <NA>
#> 103 Department of Ecology and Evolutionary Biology, Tulane University, New Orleans, LA, USA.
#> 104 https://ror.org/04vmvtb21
#> 105 Timothée Poisot
#> 106 Poisot
#> 107 Timothée
#> 108 https://orcid.org/0000-0002-0735-5184
#> 109 Département de Sciences Biologiques, Université de Montréal, Montreal, QC, Canada.
#> 110 https://ror.org/0161xgx34
#> 111 Hailey Robertson
#> 112 Robertson
#> 113 Hailey
#> 114 https://orcid.org/0009-0007-2988-307X
#> 115 Department of Epidemiology of Microbial Diseases, Yale University, New Haven, CT, USA.
#> 116 https://ror.org/03v76x132
#> 117 Sadie J Ryan
#> 118 Ryan
#> 119 Sadie J
#> 120 https://orcid.org/0000-0002-4308-6321
#> 121 Emerging Pathogens Institute, University of Florida, Gainesville, FL, USA.
#> 122 https://ror.org/02y3ad647
#> 123 Stephanie N Seifert
#> 124 Seifert
#> 125 Stephanie N
#> 126 https://orcid.org/0000-0002-4397-6156
#> 127 Paul G. Allen School for Global Health, University of Washington, Pullman, WA, USA.
#> 128 https://ror.org/00cvxb145
#> 129 David Simons
#> 130 Simons
#> 131 David
#> 132 <NA>
#> 133 Department of Anthropology, Pennsylvania State University, State College, PA, USA.
#> 134 https://ror.org/04p491231
#> 135 Amanda Vicente-Santos
#> 136 Vicente-Santos
#> 137 Amanda
#> 138 https://orcid.org/0000-0001-6012-2059
#> 139 School of Biological Sciences, University of Oklahoma, Norman, OK, USA.
#> 140 https://ror.org/02aqsxs83
#> 141 Chelsea L Wood
#> 142 Wood
#> 143 Chelsea L
#> 144 https://orcid.org/0000-0003-2738-3139
#> 145 School of Aquatic and Fishery Sciences, University of Washington, Seattle, WA, USA.
#> 146 https://ror.org/00cvxb145
#> 147 Ellie Graeden
#> 148 Graeden
#> 149 Ellie
#> 150 https://orcid.org/0000-0002-1265-9756
#> 151 Center for Global Health Science and Security, Georgetown University, Washington, DC, USA.
#> 152 https://ror.org/05vzafd60
#> 153 Colin J Carlson
#> 154 Carlson
#> 155 Colin J
#> 156 https://orcid.org/0000-0001-6960-8434
#> 157 Department of Epidemiology of Microbial Diseases, Yale University, New Haven, CT, USA. colin.carlson@yale.edu.
#> 158 https://ror.org/03v76x132
#> 159 A minimum data standard for wildlife disease research and surveillance
#> 160 2025
#> 161 en
#> 162 FILL ME IN
#> 163 abstract
#> 164 National Science Foundation
#> 165 https://ror.org/021nxhr62
#> 166 2213854
#> 167
#> 168
#> 169 National Science Foundation
#> 170 https://ror.org/021nxhr62
#> 171 2515340
#> 172
#> 173
#> 174 Data Sharing
#> 175 Wildlife disease
#> 176 Best practice
#> 177 Table (database)
#> 178 A valid Identifier like a DOI
#> 179 see accepted values here https://datacite-metadata-schema.readthedocs.io/en/4.5/appendices/appendix-1/relatedIdentifierType/#relatedidentifiertype
#> 180 see accepted values here: https://datacite-metadata-schema.readthedocs.io/en/4.5/appendices/appendix-1/relationType/#relationtype