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Data

Examples of WDDS conforming data and other useful objects

becker_disease_data
Becker et al. dataset
becker_project_metadata
Becker et al. project metadata
disease_data_required_fields
Required fields in the disease data object
minimal_disease_data
An example of minimal disease data
minimal_project_metadata
An example of minimal project metadata
project_metadata_required_fields
Required fields in the project metadata object
schema_required_fields
Wildlife Disease Data Standard required fields

Templates

Create data that conforms to the standard from pre-structured files

list_wdds_templates()
File paths for wdds templates
use_wdds_template()
Use a wildlife disease data standard template

WDDS Deposit

Interact with the Zenodo Deposit

batch_download_deposit_versions()
Batch download deposit versions
download_deposit_version()
Download deposit version
list_deposit_versions()
List Versions of a deposit on Zenodo
sanitize_version()
Sanitize version ids
set_wdds_version()
Set the wdds version for the package
wdds_data_templates()
Provides Access to Versioned Data Template Files
wdds_example_data()
Provides Access to Versioned Example Data Files
wdds_json()
Provides Access to Versioned Schema Files

JSON Prep

Prepare R objects for proper JSON formatting

clean_field_names()
Clean Field Names
get_entity()
Get entity
prep_affiliation()
prep affiliation
prep_array_objects()
Prepare an array of objects
prep_atomic()
Prepare atomic
prep_creators()
Prepare creators
prep_data()
Prepare Data
prep_descriptions()
Prepare descriptions
prep_for_json()
Prepare data for json
prep_from_metadata_template()
Prepare metadata created from the metadata template for conversion to JSON
prep_fundingReferences()
Prepare funding references
prep_identifier()
Prep identifier
prep_language()
Prep language
prep_methodology()
Prep methodology for conversion to json
prep_methods()
Prepare methods
prep_nameIdentifiers()
Prepare Name identifiers
prep_object()
Prepare an object
prep_publicationYear()
Prepare publication year items
prep_relatedIdentifiers()
Prepare related identifiers
prep_rights()
Prepare rights
prep_subjects()
Prepare subjects
prep_titles()
Prepare Titles

Schema

Access and manipulate a JSON Schema

create_object_list()
Create a list from a schema object
create_schema_list()
Create an expanded schema object
datacite_schema
Datacite Data Stadnard
disease_data_schema
Wildlife Disease Data Standard - data
get_ref_list()
Get schema references
process_array_items()
Process Array Items
project_metadata_schema
Wildlife Disease Data Standard - project_metadata
schema_properties
Wildlife Disease Data Standard - schema properties
schema_terms
Wildlife Disease Data Standard - schema terms
wdds_schema
Wildlife Disease Data Standard

Schema Docs

Create documentation from Schema

create_object_docs()
Create Docs Section for a schema object
create_schema_docs()
Create Documentation for a schema
get_ref()
Get schema references
get_required_fields()
Get the required fields
increase_docs_depth()
Increase documentation depth
paste_reduce()
Paste Reduce
paste_reduce_ul()
Paste Reduce unordered list item