Extract Project Metadata from DOI
Source:R/extract_metadata_from_doi.R
extract_metadata_from_doi.RdSome works are explicitly connected to a publication and the metadata for that publication are fairly complete. Instead of re-writing the metadata, it would be better to extract it and transform it.
See also
Other Project Metadata:
download_oa_item(),
expand_tidy_dfs(),
extract_metadata_oa(),
generate_metadata_csv(),
generate_repeat_dfs(),
make_simple_df()
Examples
doi <-"doi.org/10.1038/s41597-025-05332-x"
extract_metadata_from_doi(doi = doi,write_output=FALSE)
#> → Starting now, at 2025-10-08 17:28:25.5323
#> Getting Affiliations ■■■■■■■■ 23% | ETA: 11s
#> Getting Affiliations ■■■■■■■■■■■■■ 38% | ETA: 10s
#> Getting Affiliations ■■■■■■■■■■■■■■■■■ 54% | ETA: 8s
#> Getting Affiliations ■■■■■■■■■■■■■■■■■■■■■■■■■ 81% | ETA: 3s
#> Getting Funder Info ■■■■■■■■■■■■■■■■ 50% | ETA: 1s
#> Group Variable
#> 1 Methodology Event Based
#> 2 Archival
#> 3 Creators 1 Name
#> 4 Family Name
#> 5 Given Name
#> 6 Name Identifier
#> 7 Affiliation
#> 8 Affiliation Identifier
#> 9 Creators 2 Name
#> 10 Family Name
#> 11 Given Name
#> 12 Name Identifier
#> 13 Affiliation
#> 14 Affiliation Identifier
#> 15 Creators 3 Name
#> 16 Family Name
#> 17 Given Name
#> 18 Name Identifier
#> 19 Affiliation
#> 20 Affiliation Identifier
#> 21 Creators 4 Name
#> 22 Family Name
#> 23 Given Name
#> 24 Name Identifier
#> 25 Affiliation
#> 26 Affiliation Identifier
#> 27 Creators 5 Name
#> 28 Family Name
#> 29 Given Name
#> 30 Name Identifier
#> 31 Affiliation
#> 32 Affiliation Identifier
#> 33 Creators 6 Name
#> 34 Family Name
#> 35 Given Name
#> 36 Name Identifier
#> 37 Affiliation
#> 38 Affiliation Identifier
#> 39 Creators 7 Name
#> 40 Family Name
#> 41 Given Name
#> 42 Name Identifier
#> 43 Affiliation
#> 44 Affiliation Identifier
#> 45 Creators 8 Name
#> 46 Family Name
#> 47 Given Name
#> 48 Name Identifier
#> 49 Affiliation
#> 50 Affiliation Identifier
#> 51 Creators 9 Name
#> 52 Family Name
#> 53 Given Name
#> 54 Name Identifier
#> 55 Affiliation
#> 56 Affiliation Identifier
#> 57 Creators 10 Name
#> 58 Family Name
#> 59 Given Name
#> 60 Name Identifier
#> 61 Affiliation
#> 62 Affiliation Identifier
#> 63 Creators 11 Name
#> 64 Family Name
#> 65 Given Name
#> 66 Name Identifier
#> 67 Affiliation
#> 68 Affiliation Identifier
#> 69 Creators 12 Name
#> 70 Family Name
#> 71 Given Name
#> 72 Name Identifier
#> 73 Affiliation
#> 74 Affiliation Identifier
#> 75 Creators 13 Name
#> 76 Family Name
#> 77 Given Name
#> 78 Name Identifier
#> 79 Affiliation
#> 80 Affiliation Identifier
#> 81 Creators 14 Name
#> 82 Family Name
#> 83 Given Name
#> 84 Name Identifier
#> 85 Affiliation
#> 86 Affiliation Identifier
#> 87 Creators 15 Name
#> 88 Family Name
#> 89 Given Name
#> 90 Name Identifier
#> 91 Affiliation
#> 92 Affiliation Identifier
#> 93 Creators 16 Name
#> 94 Family Name
#> 95 Given Name
#> 96 Name Identifier
#> 97 Affiliation
#> 98 Affiliation Identifier
#> 99 Creators 17 Name
#> 100 Family Name
#> 101 Given Name
#> 102 Name Identifier
#> 103 Affiliation
#> 104 Affiliation Identifier
#> 105 Creators 18 Name
#> 106 Family Name
#> 107 Given Name
#> 108 Name Identifier
#> 109 Affiliation
#> 110 Affiliation Identifier
#> 111 Creators 19 Name
#> 112 Family Name
#> 113 Given Name
#> 114 Name Identifier
#> 115 Affiliation
#> 116 Affiliation Identifier
#> 117 Creators 20 Name
#> 118 Family Name
#> 119 Given Name
#> 120 Name Identifier
#> 121 Affiliation
#> 122 Affiliation Identifier
#> 123 Creators 21 Name
#> 124 Family Name
#> 125 Given Name
#> 126 Name Identifier
#> 127 Affiliation
#> 128 Affiliation Identifier
#> 129 Creators 22 Name
#> 130 Family Name
#> 131 Given Name
#> 132 Name Identifier
#> 133 Affiliation
#> 134 Affiliation Identifier
#> 135 Creators 23 Name
#> 136 Family Name
#> 137 Given Name
#> 138 Name Identifier
#> 139 Affiliation
#> 140 Affiliation Identifier
#> 141 Creators 24 Name
#> 142 Family Name
#> 143 Given Name
#> 144 Name Identifier
#> 145 Affiliation
#> 146 Affiliation Identifier
#> 147 Creators 25 Name
#> 148 Family Name
#> 149 Given Name
#> 150 Name Identifier
#> 151 Affiliation
#> 152 Affiliation Identifier
#> 153 Creators 26 Name
#> 154 Family Name
#> 155 Given Name
#> 156 Name Identifier
#> 157 Affiliation
#> 158 Affiliation Identifier
#> 159 Titles 1 title
#> 160 publicationYear publicationYear
#> 161 language language
#> 162 Descriptions 1 Description
#> 163 Description Type
#> 164 Funding References 1 Funder Name
#> 165 Funder Identifier
#> 166 Award Number
#> 167 Award URI
#> 168 Award ID
#> 169 Funding References 2 Funder Name
#> 170 Funder Identifier
#> 171 Award Number
#> 172 Award URI
#> 173 Award ID
#> 174 Subjects 1 Subject
#> 175 Subjects 2 Subject
#> 176 Subjects 3 Subject
#> 177 Subjects 4 Subject
#> 178 Related Identifiers 1 Related Identifier
#> 179 Related Identifier Type
#> 180 Relation Type
#> Value
#> 1 FALSE
#> 2 FALSE
#> 3 Collin J Schwantes
#> 4 Schwantes
#> 5 Collin J
#> 6 https://orcid.org/0000-0002-9882-941X
#> 7 Department of Epidemiology of Microbial Diseases, Yale University, New Haven, CT, USA. collin.schwantes@yale.edu.
#> 8 https://ror.org/03v76x132
#> 9 Cecilia A Sánchez
#> 10 Sánchez
#> 11 Cecilia A
#> 12 https://orcid.org/0000-0002-1141-6816
#> 13 Department of Epidemiology of Microbial Diseases, Yale University, New Haven, CT, USA. cecilia.sanchez@yale.edu.
#> 14 https://ror.org/03v76x132
#> 15 Tess Stevens
#> 16 Stevens
#> 17 Tess
#> 18 <NA>
#> 19 Center for Global Health Science and Security, Georgetown University, Washington, DC, USA.
#> 20 https://ror.org/05vzafd60
#> 21 Ryan Zimmerman
#> 22 Zimmerman
#> 23 Ryan
#> 24 https://orcid.org/0000-0002-4376-7418
#> 25 Center for Global Health Science and Security, Georgetown University, Washington, DC, USA.
#> 26 https://ror.org/05vzafd60
#> 27 Greg Albery
#> 28 Albery
#> 29 Greg
#> 30 https://orcid.org/0000-0001-6260-2662
#> 31 Department of Biology, Georgetown University, Washington, DC, USA.
#> 32 https://ror.org/05vzafd60
#> 33 Daniel J Becker
#> 34 Becker
#> 35 Daniel J
#> 36 https://orcid.org/0000-0003-4315-8628
#> 37 School of Biological Sciences, University of Oklahoma, Norman, OK, USA.
#> 38 https://ror.org/02aqsxs83
#> 39 Cole B Brookson
#> 40 Brookson
#> 41 Cole B
#> 42 https://orcid.org/0000-0003-1237-4096
#> 43 Department of Epidemiology of Microbial Diseases, Yale University, New Haven, CT, USA.
#> 44 https://ror.org/03v76x132
#> 45 Rebekah C Kading
#> 46 Kading
#> 47 Rebekah C
#> 48 https://orcid.org/0000-0002-4996-915X
#> 49 Center for Vector-borne Infectious Diseases, Department of Microbiology, Immunology, and Pathology, Colorado State University, Fort Collins, CO, USA.
#> 50 https://ror.org/03k1gpj17
#> 51 Carl N Keiser
#> 52 Keiser
#> 53 Carl N
#> 54 https://orcid.org/0000-0002-4936-7810
#> 55 Emerging Pathogens Institute, University of Florida, Gainesville, FL, USA.
#> 56 https://ror.org/02y3ad647
#> 57 Shashank Khandelwal
#> 58 Khandelwal
#> 59 Shashank
#> 60 <NA>
#> 61 Blue Tiger, LLC, Timonium, MD, USA.
#> 62 https://ror.org/01mzcg363
#> 63 Stephanie Kramer-Schadt
#> 64 Kramer-Schadt
#> 65 Stephanie
#> 66 https://orcid.org/0000-0002-9269-4446
#> 67 Department of Ecological Dynamics, Leibniz Institute for Zoo and Wildlife Research, Berlin, Germany.
#> 68 https://ror.org/05nywn832
#> 69 Raphael Krut-Landau
#> 70 Krut-Landau
#> 71 Raphael
#> 72 <NA>
#> 73 Blue Tiger, LLC, Timonium, MD, USA.
#> 74 https://ror.org/01mzcg363
#> 75 Clifton McKee
#> 76 McKee
#> 77 Clifton
#> 78 https://orcid.org/0000-0002-6149-0598
#> 79 Department of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA.
#> 80 https://ror.org/00za53h95
#> 81 Diego Montecino-Latorre
#> 82 Montecino-Latorre
#> 83 Diego
#> 84 https://orcid.org/0000-0002-5009-5939
#> 85 Wildlife Conservation Society, Health Program, New York, NY, USA.
#> 86 https://ror.org/01xnsst08
#> 87 Zoe O'Donoghue
#> 88 O'Donoghue
#> 89 Zoe
#> 90 <NA>
#> 91 Department of Epidemiology of Microbial Diseases, Yale University, New Haven, CT, USA.
#> 92 https://ror.org/03v76x132
#> 93 Sarah H Olson
#> 94 Olson
#> 95 Sarah H
#> 96 https://orcid.org/0000-0002-8484-9006
#> 97 Wildlife Conservation Society, Health Program, New York, NY, USA.
#> 98 https://ror.org/01xnsst08
#> 99 Mika O'Shea
#> 100 O'Shea
#> 101 Mika
#> 102 <NA>
#> 103 Department of Ecology and Evolutionary Biology, Tulane University, New Orleans, LA, USA.
#> 104 https://ror.org/04vmvtb21
#> 105 Timothée Poisot
#> 106 Poisot
#> 107 Timothée
#> 108 https://orcid.org/0000-0002-0735-5184
#> 109 Département de Sciences Biologiques, Université de Montréal, Montreal, QC, Canada.
#> 110 https://ror.org/0161xgx34
#> 111 Hailey Robertson
#> 112 Robertson
#> 113 Hailey
#> 114 https://orcid.org/0009-0007-2988-307X
#> 115 Department of Epidemiology of Microbial Diseases, Yale University, New Haven, CT, USA.
#> 116 https://ror.org/03v76x132
#> 117 Sadie J Ryan
#> 118 Ryan
#> 119 Sadie J
#> 120 https://orcid.org/0000-0002-4308-6321
#> 121 Emerging Pathogens Institute, University of Florida, Gainesville, FL, USA.
#> 122 https://ror.org/02y3ad647
#> 123 Stephanie N Seifert
#> 124 Seifert
#> 125 Stephanie N
#> 126 https://orcid.org/0000-0002-4397-6156
#> 127 Paul G. Allen School for Global Health, University of Washington, Pullman, WA, USA.
#> 128 https://ror.org/00cvxb145
#> 129 David Simons
#> 130 Simons
#> 131 David
#> 132 <NA>
#> 133 Department of Anthropology, Pennsylvania State University, State College, PA, USA.
#> 134 https://ror.org/04p491231
#> 135 Amanda Vicente-Santos
#> 136 Vicente-Santos
#> 137 Amanda
#> 138 https://orcid.org/0000-0001-6012-2059
#> 139 School of Biological Sciences, University of Oklahoma, Norman, OK, USA.
#> 140 https://ror.org/02aqsxs83
#> 141 Chelsea L Wood
#> 142 Wood
#> 143 Chelsea L
#> 144 https://orcid.org/0000-0003-2738-3139
#> 145 School of Aquatic and Fishery Sciences, University of Washington, Seattle, WA, USA.
#> 146 https://ror.org/00cvxb145
#> 147 Ellie Graeden
#> 148 Graeden
#> 149 Ellie
#> 150 https://orcid.org/0000-0002-1265-9756
#> 151 Center for Global Health Science and Security, Georgetown University, Washington, DC, USA.
#> 152 https://ror.org/05vzafd60
#> 153 Colin J Carlson
#> 154 Carlson
#> 155 Colin J
#> 156 https://orcid.org/0000-0001-6960-8434
#> 157 Department of Epidemiology of Microbial Diseases, Yale University, New Haven, CT, USA. colin.carlson@yale.edu.
#> 158 https://ror.org/03v76x132
#> 159 A minimum data standard for wildlife disease research and surveillance
#> 160 2025
#> 161 en
#> 162 FILL ME IN
#> 163 abstract
#> 164 National Science Foundation
#> 165 https://ror.org/021nxhr62
#> 166 2213854
#> 167
#> 168
#> 169 National Science Foundation
#> 170 https://ror.org/021nxhr62
#> 171 2515340
#> 172
#> 173
#> 174 Data Sharing
#> 175 Wildlife disease
#> 176 Best practice
#> 177 Table (database)
#> 178 A valid Identifier like a DOI
#> 179 see accepted values here https://datacite-metadata-schema.readthedocs.io/en/4.5/appendices/appendix-1/relatedIdentifierType/#relatedidentifiertype
#> 180 see accepted values here: https://datacite-metadata-schema.readthedocs.io/en/4.5/appendices/appendix-1/relationType/#relationtype